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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
total RNA-seq
19
ChIP-seq
3
ATAC-seq
3
Hi-C
1
pCHi-C
Assay category
104
Transcription
19
DNA binding
3
3D chromatin structure
3
DNA accessibility
Target of assay
13
control
4
transcription factor
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
Date released
79
February, 2021
19
November, 2017
9
August, 2021
6
March, 2020
5
January, 2019
5
October, 2019
4
May, 2021
2
November, 2019
1
January, 2018
Available data
517
bigWig
509
bam
bed narrowPeak
367
fastq
351
bigBed narrowPeak
105
tsv
59
bed broadPeak
59
bigBed broadPeak
17
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
130
Homo sapiens
Biosample type
969
tissue
330
primary cell
166
in vitro differentiated cells
130
cell line
1
stem cell
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
37
epithelium
37
pancreas
26
liver
8
embryo
4
kidney
1
blood
1
bodily fluid
Project
128
AMP
2
T1D
Genome assembly (visualization)
130
hg19
105
GRCh38
Lab
129
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
39
inconsistent ontology term
Audit category:
2
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA methylation
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
130 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
2
1
HepG2
5
19
1
1
H1-hESC
8
early embryonic cell
2
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