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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
133
ATAC-seq
22
Hi-C
2
ChIP-seq
2
pCHi-C
1
total RNA-seq
Assay category
133
DNA accessibility
22
3D chromatin structure
DNA methylation
2
DNA binding
1
Transcription
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
38
February, 2023
28
November, 2019
21
February, 2021
18
May, 2022
13
May, 2021
12
August, 2021
12
March, 2020
10
October, 2019
3
March, 2019
3
October, 2022
1
May, 2023
1
November, 2020
Available data
bigWig
2998
bam
1598
bed narrowPeak
1402
tsv
1004
fastq
963
bigBed narrowPeak
298
bed broadPeak
262
bigBed broadPeak
bed bed3+
238
tagAlign
22
hic
21
bedpe bed3+
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
160
Homo sapiens
Biosample type
95
tissue
32
in vitro differentiated cells
21
primary cell
12
cell line
Organ
47
pancreas
27
eye
20
epithelium
13
connective tissue
12
bone element
12
skeleton
11
blood vessel
11
heart
11
vasculature
8
artery
6
limb
4
liver
3
adipose tissue
3
brain
2
musculature of body
2
vein
1
kidney
Project
157
AMP
3
HPAP
Genome assembly (visualization)
188
GRCh38
160
hg19
Lab
134
AMP-T2D consortium
18
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
Audit category:
18
inconsistent ontology term
4
audit script error
1
inconsistent replicate
assay_slims!
DNA methylation
files.file_type!
bigWig
bed bed3+
BIOSAMPLE
ASSAY
160 results
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ATAC-seq
Hi-C
ChIP-seq
pCHi-C
total RNA-seq
tissue
islet of Langerhans
39
2
retina
15
pigmented layer of retina
12
adipose tissue
1
1
psoas muscle
2
+ See 23 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
adipocyte
4
cardiomyocytes (cardiac muscle cell)
1
2
1
+ See 2 more…
primary cell
monocyte
13
endothelial cell of umbilical vein
2
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
osteoblast
1
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
1
1
HepG2
1
1
See all biosamples
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