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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ATAC-seq
7
Hi-C
2
ChIP-seq
Assay category
40
DNA accessibility
7
3D chromatin structure
2
DNA binding
DNA methylation
Target of assay
2
control
Date released
22
November, 2019
18
May, 2022
3
March, 2019
3
October, 2022
2
September, 2017
1
March, 2020
Available data
635
bam
bigWig
408
tsv
363
fastq
212
bed narrowPeak
89
bigBed narrowPeak
27
bed bed3+
18
bed broadPeak
14
tagAlign
7
hic
6
bedpe bed3+
5
bigBed broadPeak
3
cool
1
bedpe
1
hdf5
Organism
49
Homo sapiens
Biosample type
44
tissue
3
primary cell
2
cell line
Organ
49
pancreas
27
eye
21
connective tissue
20
epithelium
12
bone element
12
skeleton
11
blood vessel
11
heart
11
vasculature
8
artery
6
limb
6
liver
3
adipose tissue
3
brain
3
musculature of body
2
vein
1
embryo
1
kidney
Project
46
AMP
3
HPAP
Genome assembly (visualization)
49
hg19
24
GRCh38
Lab
25
AMP-T2D consortium
18
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
Mark McCarthy, Oxford
Audit category:
3
audit script error
2
inconsistent ontology term
assay_slims!
DNA methylation
files.file_type!
bigWig
BIOSAMPLE
ASSAY
49 results
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ATAC-seq
Hi-C
ChIP-seq
tissue
islet of Langerhans
39
2
2
pancreas
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
1
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