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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
393
ChIP-seq
104
total RNA-seq
13
ATAC-seq
2
DNase-seq
2
Hi-C
1
pCHi-C
Assay category
393
DNA binding
104
Transcription
15
DNA accessibility
2
3D chromatin structure
Target of assay
341
transcription factor
85
recombinant protein
61
RNA binding protein
34
histone
34
histone modification
30
chromatin remodeller
17
broad histone mark
17
narrow histone mark
13
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
93
February, 2021
54
November, 2018
27
December, 2018
20
January, 2019
20
October, 2019
14
November, 2019
8
August, 2021
7
March, 2020
5
May, 2021
1
January, 2018
Available data
509
bam
503
bigWig
386
bed narrowPeak
367
fastq
351
bigBed narrowPeak
105
tsv
59
bed broadPeak
59
bigBed broadPeak
17
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
Organism
515
Homo sapiens
Biosample type
1703
tissue
515
cell line
400
primary cell
285
in vitro differentiated cells
3
stem cell
Organ
315
liver
64
artery
64
blood vessel
64
heart
64
vasculature
58
pancreas
55
blood
55
bodily fluid
52
epithelium
12
kidney
8
embryo
Project
511
AMP
4
T1D
Genome assembly (visualization)
515
hg19
463
GRCh38
Lab
515
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
60
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
515 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
cell line
HepG2
308
5
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
1
EndoC_BH1
13
33
3
1
H1-hESC
8
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