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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
Hi-C
Assay category
157
DNA accessibility
136
DNA binding
26
3D chromatin structure
19
DNA methylation
2
Transcription
Date released
10
March, 2020
4
July, 2019
4
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2019
Available data
22
hic
19
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
3
cool
1
bedpe
Organism
26
Homo sapiens
Biosample type
11
tissue
9
primary cell
4
in vitro differentiated cells
2
cell line
Organ
8
epithelium
7
pancreas
5
blood vessel
5
vasculature
3
brain
3
heart
3
liver
2
musculature of body
2
vein
1
connective tissue
1
kidney
Project
23
AMP
3
HPAP
Genome assembly (visualization)
27
hg19
GRCh38
Lab
20
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
4
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
26 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
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