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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
Hi-C
Assay category
1388
Transcription
1276
DNA binding
441
DNA accessibility
25
3D chromatin structure
19
DNA methylation
Date released
10
March, 2020
5
October, 2019
4
July, 2019
3
October, 2022
August, 2021
2
November, 2019
1
March, 2019
Available data
20
hic
18
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
1
bedpe
Organism
25
Homo sapiens
Biosample type
10
tissue
9
primary cell
4
in vitro differentiated cells
2
cell line
Organ
8
epithelium
8
pancreas
5
blood vessel
5
vasculature
3
brain
3
heart
2
liver
2
musculature of body
2
vein
1
connective tissue
Project
22
AMP
3
HPAP
Genome assembly (visualization)
25
hg19
2
GRCh38
Lab
21
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
month_released!
August, 2021
BIOSAMPLE
ASSAY
25 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
Panc1
1
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