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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
Hi-C
Assay category
1345
Transcription
1226
DNA binding
431
DNA accessibility
22
3D chromatin structure
18
DNA methylation
Date released
8
March, 2020
4
October, 2019
3
October, 2022
2
August, 2021
2
July, 2019
2
November, 2019
1
March, 2019
Available data
19
hic
17
bedpe bed3+
3
bed bed3+
3
bigWig
3
cool
3
hdf5
1
bedpe
Organism
22
Homo sapiens
Biosample type
10
tissue
5
primary cell
4
in vitro differentiated cells
3
cell line
Organ
8
epithelium
8
pancreas
5
blood vessel
vasculature
3
brain
3
heart
3
liver
2
musculature of body
2
vein
1
connective tissue
1
kidney
Project
19
AMP
3
HPAP
Genome assembly (visualization)
22
hg19
2
GRCh38
Lab
16
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
3
audit script error
Audit category:
1
inconsistent assembly
organ_slims!
vasculature
BIOSAMPLE
ASSAY
22 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
primary cell
astrocyte of the cerebellum
1
brain pericyte
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
Panc1
1
See all biosamples
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