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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ATAC-seq
180
DNase-seq
3
FAIRE-seq
1
snATAC-seq
Assay category
1142
DNA binding
997
Transcription
374
DNA accessibility
19
3D chromatin structure
17
DNA methylation
Date released
162
June, 2019
45
February, 2023
45
May, 2020
22
February, 2021
21
May, 2022
18
May, 2021
17
October, 2019
12
August, 2021
7
July, 2019
7
November, 2018
6
November, 2019
5
August, 2017
3
January, 2018
2
November, 2020
2
October, 2017
Available data
298
bed narrowPeak
291
bam
276
bigWig
188
bigBed narrowPeak
181
bed bed3+
178
bed broadPeak
178
bigBed broadPeak
13
fastq
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
374
Homo sapiens
Biosample type
235
tissue
85
primary cell
43
in vitro differentiated cells
11
cell line
Organ
pancreas
73
kidney
50
epithelium
44
limb
39
heart
35
musculature of body
33
connective tissue
31
eye
28
liver
24
brain
22
vasculature
20
blood vessel
18
ureter
14
artery
12
bone element
12
skeleton
8
adipose tissue
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
Project
374
AMP
Genome assembly (visualization)
374
GRCh38
374
hg19
Lab
344
AMP-T2D consortium
20
Karen Mohlke, UNC
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
21
inconsistent ontology term
1
audit script error
1
inconsistent replicate
organ_slims!
pancreas
BIOSAMPLE
ASSAY
374 results
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Clear Filters
ATAC-seq
DNase-seq
FAIRE-seq
snATAC-seq
tissue
liver
20
2
retina
15
3
muscle of arm
17
heart
16
brain
1
14
+ See 44 more…
primary cell
monocyte
15
endothelial cell of umbilical vein
2
1
osteoblast
2
1
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 41 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
glomerular visceral epithelial cell
1
See all biosamples
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