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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
429
ChIP-seq
Assay category
429
DNA binding
162
Transcription
28
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
329
transcription factor
83
histone modification
82
histone
78
recombinant protein
55
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
14
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
50
December, 2017
46
November, 2018
27
May, 2020
18
August, 2017
17
August, 2021
5
October, 2019
Available data
428
bigWig
415
bam
409
bed narrowPeak
380
fastq
348
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
42
tagAlign
6
bed bed3+
3
tar
Organism
429
Homo sapiens
Biosample type
322
cell line
90
tissue
14
in vitro differentiated cells
3
primary cell
Organ
429
liver
163
pancreas
123
brain
101
epithelium
79
vasculature
76
blood vessel
76
connective tissue
74
heart
54
blood
54
bodily fluid
48
limb
39
kidney
27
musculature of body
25
artery
24
nerve
19
adipose tissue
15
embryo
12
spleen
12
vein
2
eye
1
pituitary gland
Project
429
AMP
Genome assembly (visualization)
429
hg19
360
GRCh38
Lab
415
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
429 results
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Clear Filters
ChIP-seq
cell line
HepG2
322
tissue
liver
83
right lobe of liver
7
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
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