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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1140
total RNA-seq
601
ChIP-seq
212
ATAC-seq
174
DNase-seq
27
Hi-C
18
small RNA-seq
15
RRBS
8
single cell RNA-seq
4
pCHi-C
3
FAIRE-seq
2
Capture-C
1
snATAC-seq
Assay category
174
DNA accessibility
Date released
164
June, 2019
8
October, 2019
1
August, 2017
1
November, 2020
Available data
186
bam
186
bed narrowPeak
186
bigBed narrowPeak
186
bigWig
183
bed broadPeak
183
bigBed broadPeak
181
bed bed3+
fastq
Organism
174
Homo sapiens
Biosample type
151
tissue
21
primary cell
2
cell line
Organ
72
kidney
36
limb
33
musculature of body
27
heart
20
brain
18
ureter
11
epithelium
10
vasculature
8
blood vessel
6
connective tissue
4
artery
4
eye
3
pancreas
2
liver
2
nerve
2
vein
1
adipose tissue
Project
174
AMP
Genome assembly (visualization)
196
GRCh38
174
hg19
Lab
174
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
174 results
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DNase-seq
tissue
muscle of arm
17
heart
16
kidney
13
muscle of leg
13
brain
12
+ See 24 more…
primary cell
cardiac fibroblast
2
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
+ See 14 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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