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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1269
total RNA-seq
1127
ChIP-seq
252
ATAC-seq
178
DNase-seq
100
single cell RNA-seq
22
Hi-C
19
RRBS
18
small RNA-seq
4
FAIRE-seq
4
pCHi-C
2
Capture-C
1
snATAC-seq
Assay category
178
DNA accessibility
Date released
164
June, 2019
9
November, 2018
October, 2019
4
August, 2017
1
November, 2020
Available data
178
bam
178
bed narrowPeak
178
bigBed narrowPeak
178
bigWig
176
bed broadPeak
176
bigBed broadPeak
174
bed bed3+
12
fastq
Organism
178
Homo sapiens
Biosample type
157
tissue
20
primary cell
1
in vitro differentiated cells
Organ
71
kidney
33
musculature of body
32
limb
27
heart
22
brain
18
ureter
8
connective tissue
8
epithelium
6
vasculature
5
liver
5
pancreas
4
blood vessel
4
eye
2
adipose tissue
2
artery
1
spleen
Project
178
AMP
Genome assembly (visualization)
199
GRCh38
178
hg19
Lab
178
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
178 results
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DNase-seq
tissue
muscle of arm
17
heart
16
brain
14
kidney
13
muscle of leg
13
+ See 27 more…
primary cell
cardiac fibroblast
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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