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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
13
ChIP-seq
5
single cell RNA-seq
3
ATAC-seq
1
Hi-C
Assay category
38
Transcription
13
DNA binding
3
DNA accessibility
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
14
November, 2019
5
July, 2018
5
March, 2020
5
May, 2021
Available data
53
bigWig
52
bam
39
tsv
14
bed narrowPeak
5
fastq
1
bedpe bed3+
1
hic
Organism
55
Homo sapiens
Biosample type
50
cell line
5
primary cell
Organ
61
epithelium
55
pancreas
16
kidney
14
connective tissue
8
musculature of body
5
heart
4
embryo
2
brain
1
adipose tissue
1
limb
1
liver
1
vasculature
Project
51
AMP
4
T1D
Genome assembly (visualization)
55
hg19
52
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
55
inconsistent ontology term
3
audit script error
BIOSAMPLE
ASSAY
55 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
Hi-C
cell line
EndoC_BH1
33
13
3
1
primary cell
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
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