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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
88
ChIP-seq
3
Hi-C
Assay category
88
DNA binding
3
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
85
May, 2021
3
March, 2020
3
October, 2022
Available data
88
bam
88
bed narrowPeak
88
bigWig
84
tagAlign
3
bedpe bed3+
3
cool
3
hic
Organism
91
Homo sapiens
Biosample type
87
primary cell
2
cell line
2
tissue
Organ
7
pancreas
5
epithelium
Project
AMP
88
T1D
3
HPAP
Genome assembly (visualization)
99
GRCh38
91
hg19
Lab
84
Kyle Gaulton, UCSD
4
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
2
inconsistent ontology term
award.project!
AMP
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
Hi-C
primary cell
monocyte
84
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
2
tissue
islet of Langerhans
2
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