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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
15
ATAC-seq
15
total RNA-seq
4
single cell RNA-seq
1
DNase-seq
1
RRBS
1
small RNA-seq
Assay category
50
DNA binding
20
Transcription
16
DNA accessibility
1
DNA methylation
Target of assay
33
histone
33
histone modification
17
transcription factor
16
broad histone mark
16
narrow histone mark
5
RNA binding protein
2
chromatin remodeller
Date released
42
August, 2017
10
February, 2021
9
June, 2019
7
July, 2019
5
February, 2023
5
November, 2020
2
April, 2018
2
August, 2021
2
July, 2018
2
October, 2019
1
May, 2021
Available data
88
bigWig
86
bam
61
bed narrowPeak
52
fastq
bed bed3+
20
tsv
17
bigBed narrowPeak
6
bed bed3
6
bed broadPeak
6
bigBed broadPeak
4
bed bedgraph
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
87
Homo sapiens
Biosample type
tissue
60
in vitro differentiated cells
27
primary cell
Organ
350
liver
284
epithelium
243
pancreas
88
vasculature
87
connective tissue
84
blood vessel
73
heart
66
artery
55
blood
55
bodily fluid
33
kidney
26
embryo
15
vein
13
brain
11
musculature of body
3
eye
2
adipose tissue
1
pericardium
Project
87
AMP
Genome assembly (visualization)
87
hg19
73
GRCh38
Lab
85
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
10
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
2
inconsistent control read length
biosample_type!
tissue
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
DNase-seq
RRBS
small RNA-seq
in vitro differentiated cells
adipocyte
41
7
4
1
chondrocyte
5
cardiac fibroblast
1
osteoblast
1
primary cell
osteoblast
2
5
mesenchymal stem cell
6
cardiac fibroblast
3
1
pancreatic stellate cell
4
mesenchymal stem cell of adipose
1
1
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