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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
Hi-C
2
pCHi-C
Assay category
6
3D chromatin structure
Date released
5
March, 2020
2
October, 2019
1
November, 2019
Available data
1170
bam
1130
bigWig
714
fastq
689
bed narrowPeak
470
bigBed narrowPeak
388
tsv
102
bed broadPeak
102
bigBed broadPeak
57
bed bed3+
49
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
8
bedpe bed3+
7
bed bed3
7
hic
5
hdf5
4
bed bedgraph
4
tar
2
ibed
Organism
8
Homo sapiens
Biosample type
tissue
6
in vitro differentiated cells
1
cell line
1
primary cell
Organ
2
epithelium
1
blood vessel
1
pancreas
1
vasculature
1
vein
Project
8
AMP
Genome assembly (visualization)
8
hg19
Lab
8
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
8 results
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Hi-C
pCHi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
cell line
EndoC_BH1
1
primary cell
endothelial cell of umbilical vein
1
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