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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
339
ChIP-seq
10
total RNA-seq
2
ATAC-seq
2
DNase-seq
2
Hi-C
1
RRBS
1
pCHi-C
Assay category
339
DNA binding
10
Transcription
4
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
290
transcription factor
78
recombinant protein
53
RNA binding protein
33
histone
33
histone modification
21
chromatin remodeller
17
broad histone mark
16
narrow histone mark
13
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
42
November, 2018
18
August, 2021
14
December, 2017
5
December, 2019
5
January, 2019
2
February, 2021
2
July, 2019
2
June, 2019
1
October, 2019
Available data
352
bigWig
339
bam
327
fastq
324
bed narrowPeak
305
bigBed narrowPeak
60
bed broadPeak
60
bigBed broadPeak
15
tagAlign
10
tsv
7
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
Organism
357
Homo sapiens
Biosample type
330
cell line
tissue
14
in vitro differentiated cells
13
primary cell
Organ
357
liver
299
epithelium
245
pancreas
107
connective tissue
95
vasculature
89
blood vessel
75
heart
66
artery
55
blood
55
bodily fluid
37
kidney
29
embryo
21
brain
17
vein
12
musculature of body
4
eye
2
adipose tissue
1
pericardium
Project
357
AMP
Genome assembly (visualization)
357
hg19
293
GRCh38
Lab
342
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
biosample_type!
tissue
month_released!
May, 2020
BIOSAMPLE
ASSAY
357 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
pCHi-C
cell line
HepG2
322
5
1
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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