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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
119
ChIP-seq
42
ATAC-seq
4
Hi-C
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
119
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
77
histone
77
histone modification
40
narrow histone mark
37
transcription factor
36
broad histone mark
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
49
August, 2017
38
December, 2017
26
August, 2021
16
February, 2018
12
February, 2023
10
May, 2021
6
October, 2019
5
November, 2019
4
February, 2021
4
March, 2020
Available data
137
bam
131
bed narrowPeak
127
bigWig
103
fastq
25
bed bed3+
17
bigBed narrowPeak
17
tagAlign
7
bed bedgraph
6
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
170
Homo sapiens
Biosample type
853
tissue
476
primary cell
426
cell line
170
in vitro differentiated cells
3
stem cell
Organ
68
connective tissue
18
epithelium
15
embryo
14
liver
2
pancreas
Project
170
AMP
Genome assembly (visualization)
170
hg19
138
GRCh38
4
hg18
Lab
158
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
21
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
170 results
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ChIP-seq
ATAC-seq
Hi-C
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
48
8
1
1
neural progenitor cell
12
10
hepatocyte
14
pancreatic endoderm
13
embryonic stem cell
2
6
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