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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ATAC-seq
ChIP-seq
4
Hi-C
2
Capture-C
2
pCHi-C
Assay category
30
DNA accessibility
4
3D chromatin structure
Date released
12
August, 2021
9
February, 2023
5
November, 2019
4
February, 2021
4
March, 2020
4
October, 2019
Available data
145
bam
bigWig
127
tsv
22
bed narrowPeak
16
fastq
7
bed bedgraph
6
bed bed3+
6
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
38
Homo sapiens
Biosample type
103
tissue
38
in vitro differentiated cells
32
primary cell
13
cell line
Organ
15
connective tissue
Project
38
AMP
Genome assembly (visualization)
38
hg19
17
GRCh38
Lab
36
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
15
inconsistent ontology term
assay_title!
ChIP-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
38 results
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ATAC-seq
Hi-C
Capture-C
pCHi-C
in vitro differentiated cells
neural progenitor cell
10
adipocyte
5
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
1
2
1
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