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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
total RNA-seq
119
ChIP-seq
38
ATAC-seq
2
Capture-C
2
Hi-C
2
pCHi-C
1
DNase-seq
Assay category
125
Transcription
119
DNA binding
39
DNA accessibility
2
3D chromatin structure
Target of assay
77
histone
77
histone modification
40
narrow histone mark
37
transcription factor
36
broad histone mark
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
89
May, 2021
49
August, 2017
38
December, 2017
33
August, 2021
31
February, 2018
26
February, 2021
12
February, 2023
October, 2019
6
March, 2020
5
November, 2019
Available data
260
bam
250
bigWig
129
bed narrowPeak
125
tsv
118
fastq
25
bed bed3+
17
tagAlign
15
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
4
bedpe bed3+
3
txt
2
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
289
Homo sapiens
Biosample type
1592
tissue
602
primary cell
510
cell line
289
in vitro differentiated cells
3
stem cell
Organ
71
connective tissue
21
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
289
AMP
Genome assembly (visualization)
289
hg19
261
GRCh38
4
hg18
Lab
277
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
102
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
October, 2019
BIOSAMPLE
ASSAY
289 results
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total RNA-seq
ChIP-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
48
6
1
1
neural progenitor cell
7
12
10
cardiac precursors (cardiac muscle cell)
18
pancreatic endoderm
4
13
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