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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1013
total RNA-seq
501
ChIP-seq
158
DNase-seq
157
ATAC-seq
16
small RNA-seq
12
Hi-C
9
RRBS
6
single cell RNA-seq
4
FAIRE-seq
2
Capture-C
2
pCHi-C
1
snATAC-seq
Assay category
1035
Transcription
501
DNA binding
320
DNA accessibility
12
3D chromatin structure
9
DNA methylation
Target of assay
368
histone modification
367
histone
195
broad histone mark
171
narrow histone mark
125
transcription factor
28
RNA binding protein
8
control
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
478
February, 2021
229
August, 2017
October, 2019
170
May, 2020
147
June, 2019
127
May, 2021
116
July, 2018
93
May, 2019
74
December, 2017
65
April, 2019
60
July, 2019
45
February, 2023
45
November, 2019
45
October, 2018
39
May, 2022
34
August, 2021
31
February, 2018
24
March, 2020
17
November, 2018
13
October, 2017
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
May, 2023
Available data
1749
bam
1737
bigWig
1035
tsv
755
bed narrowPeak
461
bigBed narrowPeak
412
fastq
210
bed bed3+
193
bed broadPeak
157
bigBed broadPeak
82
tagAlign
12
bedpe bed3+
12
hic
10
bed bed3
9
bed bedMethyl
9
bigBed bedMethyl
7
bed bedgraph
4
txt
2
ibed
1
bedpe
Organism
1875
Homo sapiens
Biosample type
1592
tissue
602
primary cell
510
cell line
289
in vitro differentiated cells
3
stem cell
Organ
552
connective tissue
423
adipose tissue
415
pancreas
276
liver
106
heart
90
kidney
70
bone element
65
brain
61
musculature of body
49
blood vessel
49
vasculature
44
limb
32
epithelium
30
eye
21
embryo
18
ureter
14
spleen
12
skeleton
6
artery
1
pericardium
Project
1879
AMP
2
T1D
Genome assembly (visualization)
1959
GRCh38
1881
hg19
4
hg18
Lab
1826
AMP-T2D consortium
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
7
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
104
inconsistent ontology term
27
inconsistent control
1
audit script error
Audit category:
30
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2019
BIOSAMPLE
ASSAY
1881 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
Capture-C
pCHi-C
snATAC-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
260
31
1
42
2
1
6
1
liver
146
78
2
20
1
1
1
bone tissue
58
heart left ventricle
3
29
3
2
1
1
+ See 67 more…
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
48
1
6
1
neural progenitor cell
7
12
10
cardiac precursors (cardiac muscle cell)
18
pancreatic endoderm
4
13
+ See 30 more…
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