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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
82
ChIP-seq
42
ATAC-seq
4
Hi-C
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
127
Transcription
82
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
77
histone
77
histone modification
40
narrow histone mark
transcription factor
36
broad histone mark
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
85
May, 2021
33
August, 2021
31
February, 2018
27
August, 2017
27
December, 2017
26
February, 2021
12
February, 2023
8
October, 2019
6
March, 2020
5
November, 2019
Available data
227
bam
217
bigWig
127
tsv
99
bed narrowPeak
85
fastq
19
bed bed3+
15
bigBed narrowPeak
13
tagAlign
7
bed bedgraph
6
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
260
Homo sapiens
Biosample type
1667
tissue
618
primary cell
260
in vitro differentiated cells
178
cell line
3
stem cell
Organ
51
connective tissue
18
embryo
17
epithelium
12
liver
1
heart
1
pancreas
Project
260
AMP
Genome assembly (visualization)
260
hg19
228
GRCh38
4
hg18
Lab
248
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
105
inconsistent ontology term
Audit category:
7
inconsistent control read length
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
260 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
adipocyte
4
26
8
1
1
neural progenitor cell
7
12
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
10
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