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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
226
ChIP-seq
152
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
10
RRBS
9
Hi-C
2
small RNA-seq
1
DNase-seq
1
FAIRE-seq
1
pCHi-C
Assay category
254
Transcription
226
DNA binding
86
DNA accessibility
10
DNA methylation
9
3D chromatin structure
Target of assay
214
histone
214
histone modification
110
broad histone mark
104
narrow histone mark
10
control
5
RNA binding protein
5
transcription factor
Date released
184
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
43
April, 2018
33
August, 2017
31
July, 2019
23
June, 2019
22
October, 2019
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
February, 2021
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
Available data
596
bigWig
574
bam
288
bed narrowPeak
252
tsv
226
fastq
102
bigBed narrowPeak
99
tagAlign
42
bed broadPeak
bigBed broadPeak
30
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
586
Homo sapiens
Biosample type
1595
tissue
586
primary cell
471
cell line
296
in vitro differentiated cells
3
stem cell
Organ
211
epithelium
185
pancreas
29
connective tissue
21
kidney
20
vasculature
18
blood vessel
13
vein
11
liver
11
musculature of body
10
brain
8
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
403
AMP
180
T1D
3
HPAP
Genome assembly (visualization)
586
hg19
491
GRCh38
Lab
368
AMP-T2D consortium
215
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
39
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
586 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
RRBS
Hi-C
small RNA-seq
DNase-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
7
1
pancreatic alpha cell
7
10
12
6
1
pancreatic ductal cell
13
4
10
4
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