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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
230
ChIP-seq
Assay category
230
DNA binding
Target of assay
230
histone
230
histone modification
118
broad histone mark
112
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
114
May, 2021
38
August, 2017
32
September, 2018
19
June, 2019
18
October, 2019
3
August, 2021
3
May, 2019
3
November, 2017
Available data
230
bigWig
216
bed narrowPeak
200
bam
98
tagAlign
73
fastq
47
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
3
bed bed3+
Organism
230
Homo sapiens
Biosample type
438
tissue
230
primary cell
77
in vitro differentiated cells
37
cell line
2
stem cell
Organ
63
epithelium
58
pancreas
14
vasculature
13
blood vessel
12
vein
10
kidney
8
connective tissue
8
musculature of body
3
brain
3
liver
2
heart
1
eye
Project
146
AMP
84
T1D
Genome assembly (visualization)
230
hg19
198
GRCh38
Lab
116
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
230 results
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ChIP-seq
primary cell
monocyte
84
CD8-positive, alpha-beta T cell
30
pancreatic endocrine cell
23
pancreatic ductal cell
13
endothelial cell of umbilical vein
12
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