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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
DNase-seq
4
Hi-C
3
ChIP-seq
2
total RNA-seq
1
pCHi-C
Assay category
20
DNA accessibility
4
3D chromatin structure
3
DNA binding
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
17
June, 2019
4
July, 2019
3
August, 2021
2
May, 2021
2
October, 2019
1
February, 2021
1
November, 2020
Available data
596
bigWig
574
bam
288
bed narrowPeak
252
tsv
226
fastq
102
bigBed narrowPeak
99
tagAlign
42
bed broadPeak
42
bigBed broadPeak
30
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
30
Homo sapiens
Biosample type
189
tissue
30
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
15
epithelium
8
brain
7
connective tissue
7
vasculature
6
liver
5
blood vessel
4
kidney
2
heart
2
vein
1
eye
1
musculature of body
Project
30
AMP
Genome assembly (visualization)
30
GRCh38
30
hg19
Lab
28
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
BIOSAMPLE
ASSAY
30 results
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DNase-seq
Hi-C
ChIP-seq
total RNA-seq
pCHi-C
primary cell
hepatocyte
1
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cardiac fibroblast
2
endothelial cell of umbilical vein
2
osteoblast
1
1
astrocyte of the hippocampus
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
hepatic stellate cell
1
kidney epithelial cell
1
renal cortical epithelial cell
1
retinal pigment epithelial cell
1
skeletal muscle cell
1
smooth muscle cell of the brain vasculature
1
See all biosamples
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