Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
902
total RNA-seq
504
ChIP-seq
161
DNase-seq
122
ATAC-seq
16
small RNA-seq
11
Hi-C
9
RRBS
4
FAIRE-seq
1
snATAC-seq
Assay category
918
Transcription
504
DNA binding
288
DNA accessibility
11
3D chromatin structure
9
DNA methylation
Target of assay
431
histone modification
430
histone
235
narrow histone mark
195
broad histone mark
70
transcription factor
21
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
170
May, 2020
163
October, 2019
158
August, 2017
147
June, 2019
116
July, 2018
93
May, 2019
65
April, 2019
60
July, 2019
45
October, 2018
40
November, 2019
39
May, 2022
38
May, 2021
36
December, 2017
33
February, 2023
18
March, 2020
17
November, 2018
10
October, 2017
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1623
bam
1622
bigWig
918
tsv
773
bed narrowPeak
490
bigBed narrowPeak
269
fastq
194
bed broadPeak
175
bed bed3+
160
bigBed broadPeak
102
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1724
Homo sapiens
Biosample type
1730
tissue
584
primary cell
518
cell line
292
in vitro differentiated cells
3
stem cell
Organ
470
connective tissue
412
adipose tissue
403
pancreas
268
liver
140
brain
113
heart
96
limb
92
kidney
70
blood vessel
70
bone element
70
vasculature
61
musculature of body
31
nerve
30
eye
27
artery
18
ureter
14
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
1728
AMP
2
T1D
Genome assembly (visualization)
1794
GRCh38
1730
hg19
Lab
1687
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
1730 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
266
21
1
42
2
1
1
liver
147
83
2
20
1
1
1
bone tissue
58
heart left ventricle
3
29
3
2
1
1
+ See 140 more…
See all biosamples
Download