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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ATAC-seq
11
Hi-C
9
RRBS
5
ChIP-seq
1
snATAC-seq
1
total RNA-seq
Assay category
82
DNA accessibility
11
3D chromatin structure
9
DNA methylation
5
DNA binding
1
Transcription
Target of assay
3
control
2
histone
2
histone modification
2
narrow histone mark
Date released
33
February, 2023
21
November, 2019
19
May, 2022
8
February, 2021
7
March, 2020
6
July, 2019
4
August, 2017
3
March, 2019
3
October, 2019
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1648
bam
bigWig
918
tsv
777
bed narrowPeak
493
bigBed narrowPeak
294
fastq
196
bed broadPeak
189
bed bed3+
160
bigBed broadPeak
105
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
108
Homo sapiens
Biosample type
108
tissue
43
in vitro differentiated cells
32
primary cell
13
cell line
1
stem cell
Organ
46
pancreas
27
eye
12
bone element
12
epithelium
12
skeleton
6
limb
5
musculature of body
4
brain
4
heart
3
adipose tissue
3
connective tissue
3
liver
2
kidney
1
blood vessel
1
pericardium
1
vasculature
Project
108
AMP
Genome assembly (visualization)
147
GRCh38
108
hg19
Lab
86
AMP-T2D consortium
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
108 results
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ATAC-seq
Hi-C
RRBS
ChIP-seq
snATAC-seq
total RNA-seq
tissue
islet of Langerhans
39
2
1
2
retina
15
pigmented layer of retina
12
liver
1
1
1
skeletal muscle tissue
2
1
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