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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ATAC-seq
71
ChIP-seq
27
Hi-C
19
RRBS
3
pCHi-C
3
total RNA-seq
2
Capture-C
1
snATAC-seq
Assay category
71
DNA binding
Target of assay
57
histone
57
histone modification
33
broad histone mark
24
narrow histone mark
11
transcription factor
3
control
1
RNA binding protein
Date released
33
May, 2021
20
August, 2017
14
August, 2021
2
October, 2019
1
April, 2019
1
November, 2017
Available data
1294
bigWig
bam
1228
bed narrowPeak
745
bigBed narrowPeak
704
fastq
238
tagAlign
114
bed broadPeak
79
bigBed broadPeak
53
bed bed3+
3
tar
1
tagAlign bed3+
Organism
71
Homo sapiens
Biosample type
33
primary cell
24
tissue
14
cell line
Organ
14
liver
13
musculature of body
6
pancreas
3
brain
1
adipose tissue
1
connective tissue
1
heart
Project
71
AMP
Genome assembly (visualization)
71
hg19
2
GRCh38
Lab
33
Kyle Gaulton, UCSD
24
AMP-T2D consortium
14
Bing Ren, UCSD
files.file_type!
bam
BIOSAMPLE
ASSAY
71 results
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ChIP-seq
primary cell
CD8-positive, alpha-beta T cell
33
tissue
skeletal muscle tissue
13
islet of Langerhans
6
cingulate gyrus
1
dorsal plus ventral thalamus
1
heart left ventricle
1
+ See 2 more…
cell line
HepG2
14
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