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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
14
total RNA-seq
Assay category
15
DNA binding
14
Transcription
Target of assay
11
histone
11
histone modification
7
narrow histone mark
4
broad histone mark
3
transcription factor
1
control
Date released
10
February, 2018
9
December, 2017
8
August, 2021
2
May, 2021
Available data
29
bam
28
bigWig
19
fastq
14
bed narrowPeak
14
tsv
3
bed bed3+
Organism
29
Homo sapiens
Biosample type
21
in vitro differentiated cells
8
cell line
Organ
640
pancreas
580
connective tissue
562
liver
423
adipose tissue
295
epithelium
161
heart
149
vasculature
147
blood vessel
127
brain
89
artery
70
bone element
60
limb
58
kidney
55
blood
55
bodily fluid
30
eye
29
embryo
29
nerve
27
musculature of body
13
spleen
13
vein
12
skeleton
2
pericardium
1
pituitary gland
Project
29
AMP
Genome assembly (visualization)
29
GRCh38
29
hg19
1
hg18
Lab
29
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
3
inconsistent control read length
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
total RNA-seq
in vitro differentiated cells
pancreatic endoderm
13
4
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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