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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
22
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
1
FAIRE-seq
Assay category
120
DNA binding
23
DNA accessibility
12
Transcription
Target of assay
114
histone
114
histone modification
89
narrow histone mark
25
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
76
October, 2019
25
May, 2019
20
June, 2019
14
November, 2017
12
July, 2019
6
October, 2017
2
November, 2018
Available data
159
bigWig
155
bam
141
bed narrowPeak
65
bigBed narrowPeak
43
tagAlign
37
bed broadPeak
28
bigBed broadPeak
25
bed bed3+
17
fastq
12
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
155
Homo sapiens
Biosample type
138
tissue
17
primary cell
Organ
635
pancreas
585
liver
563
connective tissue
421
adipose tissue
283
epithelium
182
heart
159
vasculature
155
brain
154
blood vessel
124
kidney
96
limb
93
artery
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
15
vein
14
spleen
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
155
AMP
Genome assembly (visualization)
215
GRCh38
155
hg19
Lab
155
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
155 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
brain
11
14
1
temporal lobe
13
1
1
angular gyrus
14
frontal cortex
2
1
1
1
superior frontal gyrus
4
+ See 64 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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