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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
336
ChIP-seq
5
total RNA-seq
Assay category
336
DNA binding
5
Transcription
Target of assay
313
transcription factor
77
recombinant protein
54
RNA binding protein
19
chromatin remodeller
13
control
5
histone
5
histone modification
3
narrow histone mark
2
broad histone mark
2
other context
2
other post-translational modification
Date released
245
November, 2017
49
November, 2018
27
December, 2018
20
January, 2019
Available data
491
bigWig
483
bam
376
bed narrowPeak
341
fastq
327
bigBed narrowPeak
105
tsv
46
bed broadPeak
46
bigBed broadPeak
6
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
341
Homo sapiens
Biosample type
341
cell line
288
tissue
221
primary cell
101
in vitro differentiated cells
1
stem cell
Organ
287
liver
54
blood
54
bodily fluid
Project
341
AMP
Genome assembly (visualization)
341
hg19
299
GRCh38
Lab
341
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
341 results
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ChIP-seq
total RNA-seq
cell line
HepG2
282
5
GM12878
54
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