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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
602
ChIP-seq
130
total RNA-seq
92
single cell RNA-seq
49
ATAC-seq
11
DNase-seq
4
RRBS
2
FAIRE-seq
Assay category
602
DNA binding
222
Transcription
62
DNA accessibility
4
DNA methylation
Target of assay
412
transcription factor
164
histone modification
163
histone
86
broad histone mark
80
RNA binding protein
78
recombinant protein
77
narrow histone mark
33
chromatin remodeller
21
control
5
other context
5
other post-translational modification
Date released
275
November, 2017
206
August, 2017
72
September, 2018
71
November, 2018
50
July, 2018
44
April, 2018
39
December, 2017
33
October, 2018
30
December, 2018
26
January, 2019
18
May, 2022
13
October, 2017
7
September, 2017
3
August, 2018
3
June, 2018
Available data
2762
bigWig
2734
bam
1467
bed narrowPeak
1275
tsv
946
bigBed narrowPeak
890
fastq
297
bed broadPeak
261
bigBed broadPeak
225
bed bed3+
221
tagAlign
19
bed bedMethyl
19
bigBed bedMethyl
18
hic
15
bedpe bed3+
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
txt
Organism
884
Homo sapiens
Biosample type
367
cell line
294
tissue
226
primary cell
in vitro differentiated cells
3
stem cell
Organ
376
liver
363
pancreas
157
epithelium
54
blood
54
bodily fluid
24
connective tissue
21
adipose tissue
17
brain
14
spleen
6
vasculature
3
blood vessel
2
musculature of body
Project
890
AMP
Genome assembly (visualization)
890
hg19
833
GRCh38
1
hg18
Lab
871
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
7
inconsistent ontology term
Audit category:
81
missing controlled_by
Audit category:
39
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
890 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
cell line
HepG2
308
5
GM12878
54
tissue
islet of Langerhans
23
97
19
1
1
liver
51
2
1
body of pancreas
25
4
2
pancreas
13
1
spleen
12
1
1
+ See 7 more…
primary cell
pancreatic beta cell
7
10
12
7
pancreatic alpha cell
7
10
12
6
pancreatic ductal cell
13
4
9
4
pancreatic acinar cell
8
4
9
5
pancreatic endocrine cell
23
+ See 16 more…
stem cell
hESC
3
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