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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
15
total RNA-seq
1
DNase-seq
Assay category
102
DNA binding
15
Transcription
1
DNA accessibility
Target of assay
64
histone
64
histone modification
33
transcription factor
32
narrow histone mark
31
broad histone mark
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
49
August, 2017
38
December, 2017
31
February, 2018
Available data
264
bam
254
bigWig
131
bed narrowPeak
127
tsv
118
fastq
25
bed bed3+
17
bigBed narrowPeak
17
tagAlign
7
bed bedgraph
6
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
118
Homo sapiens
Biosample type
367
cell line
294
tissue
226
primary cell
118
in vitro differentiated cells
stem cell
Organ
49
connective tissue
19
embryo
16
epithelium
14
liver
Project
118
AMP
Genome assembly (visualization)
118
GRCh38
118
hg19
4
hg18
Lab
118
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
biosample_type!
stem cell
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
total RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
48
1
pancreatic endoderm
13
4
hepatocyte
14
definitive endodermal cell
7
2
primitive gut cell
7
2
Posterior foregut
5
embryonic stem cell
2
2
endocrine cell
2
2
posterior foregut
2
2
Hepatic endoderm
2
islet precursor cell
1
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