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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
total RNA-seq
119
ChIP-seq
69
single cell RNA-seq
45
ATAC-seq
3
DNase-seq
2
FAIRE-seq
2
RRBS
Assay category
194
Transcription
119
DNA binding
50
DNA accessibility
2
DNA methylation
Target of assay
100
histone
100
histone modification
52
broad histone mark
48
narrow histone mark
17
transcription factor
8
RNA binding protein
2
control
Date released
153
August, 2017
72
September, 2018
39
July, 2018
34
April, 2018
28
October, 2018
18
May, 2022
7
September, 2017
5
October, 2017
3
August, 2018
3
November, 2018
2
July, 2019
1
June, 2018
Available data
635
bam
607
bigWig
408
tsv
363
fastq
212
bed narrowPeak
89
bigBed narrowPeak
27
bed bed3+
18
bed broadPeak
14
tagAlign
7
hic
6
bedpe bed3+
5
bigBed broadPeak
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe
1
hdf5
Organism
359
Homo sapiens
Biosample type
188
tissue
177
primary cell
Organ
391
liver
365
pancreas
179
epithelium
74
connective tissue
54
blood
54
bodily fluid
21
adipose tissue
19
brain
19
embryo
14
spleen
7
vasculature
4
kidney
3
blood vessel
3
musculature of body
2
heart
1
eye
1
pericardium
Project
365
AMP
Genome assembly (visualization)
365
hg19
357
GRCh38
Lab
346
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
365 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
RRBS
tissue
islet of Langerhans
97
23
19
1
1
1
body of pancreas
25
4
2
pancreas
13
1
1
primary cell
pancreatic beta cell
10
7
12
7
pancreatic alpha cell
10
7
12
6
pancreatic ductal cell
4
13
9
4
pancreatic acinar cell
4
8
9
5
pancreatic endocrine cell
23
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