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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
Assay category
200
DNA binding
Target of assay
190
histone
190
histone modification
127
narrow histone mark
63
broad histone mark
9
transcription factor
1
control
Date released
89
May, 2021
40
October, 2019
August, 2017
27
May, 2020
18
November, 2017
15
August, 2021
6
October, 2017
5
February, 2021
Available data
2746
bam
2746
bigWig
1456
bed narrowPeak
1313
tsv
921
bigBed narrowPeak
753
fastq
257
bed broadPeak
247
bigBed broadPeak
217
bed bed3+
200
tagAlign
22
hic
21
bedpe bed3+
15
bed bedMethyl
15
bigBed bedMethyl
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
200
Homo sapiens
Biosample type
87
primary cell
79
tissue
17
cell line
17
in vitro differentiated cells
Organ
43
brain
42
liver
5
epithelium
4
artery
4
blood vessel
4
heart
4
vasculature
2
pancreas
1
pituitary gland
Project
116
AMP
84
T1D
Genome assembly (visualization)
229
GRCh38
200
hg19
Lab
116
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
August, 2017
BIOSAMPLE
ASSAY
200 results
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Clear Filters
ChIP-seq
primary cell
monocyte
84
hepatocyte
3
tissue
liver
27
brain
6
angular gyrus
2
cingulate gyrus
2
middle frontal area 46
2
+ See 39 more…
cell line
HepG2
12
smooth muscle cell of the coronary artery
4
iPSC derived cell line
1
in vitro differentiated cells
neural progenitor cell
12
cardiomyocytes
3
pancreatic PP cell
2
See all biosamples
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