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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ATAC-seq
14
ChIP-seq
3
Hi-C
2
Capture-C
Assay category
51
DNA accessibility
14
DNA binding
3
3D chromatin structure
Target of assay
11
transcription factor
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
38
May, 2022
20
August, 2021
5
May, 2021
3
February, 2023
3
March, 2019
1
October, 2017
Available data
56
bed narrowPeak
45
bigWig
19
fastq
18
bam
3
bed bedgraph
3
hic
3
txt
2
bed bed3+
1
bed broadPeak
1
bedpe
1
bedpe bed3+
Organism
70
Homo sapiens
Biosample type
primary cell
43
tissue
15
cell line
12
in vitro differentiated cells
Organ
35
liver
22
pancreas
4
connective tissue
1
kidney
Project
70
AMP
Genome assembly (visualization)
78
GRCh38
70
hg19
Lab
AMP-T2D consortium
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
biosample_type!
primary cell
BIOSAMPLE
ASSAY
70 results
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ATAC-seq
ChIP-seq
Hi-C
Capture-C
tissue
islet of Langerhans
21
1
liver
20
kidney
1
cell line
HepG2
14
1
in vitro differentiated cells
embryonic stem cell
6
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
neuron cell of Hypothalamus (neuron)
1
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