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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
35
DNase-seq
4
Hi-C
4
total RNA-seq
3
RRBS
2
small RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
snATAC-seq
Assay category
39
DNA binding
38
DNA accessibility
6
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
39
histone
39
histone modification
23
broad histone mark
16
narrow histone mark
Date released
41
June, 2019
16
October, 2019
15
August, 2017
6
May, 2019
5
July, 2019
5
March, 2020
1
January, 2018
1
May, 2022
Available data
82
bigWig
73
bed narrowPeak
68
bam
60
bigBed narrowPeak
50
bed broadPeak
37
bigBed broadPeak
36
bed bed3+
13
tagAlign
6
tsv
4
hic
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
2
fastq
1
tar
1
txt
Organism
90
Homo sapiens
Biosample type
61
tissue
29
primary cell
Organ
657
pancreas
625
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
90
AMP
Genome assembly (visualization)
90
hg19
65
GRCh38
Lab
90
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
2
audit script error
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
90 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
FAIRE-seq
snATAC-seq
tissue
muscle of leg
6
13
skeletal muscle tissue
13
1
2
1
1
1
muscle of arm
17
psoas muscle
2
2
forelimb muscle
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
12
2
2
1
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
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