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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
119
ChIP-seq
37
ATAC-seq
4
Hi-C
2
pCHi-C
1
DNase-seq
Assay category
127
Transcription
119
DNA binding
38
DNA accessibility
4
3D chromatin structure
Target of assay
77
histone
77
histone modification
40
narrow histone mark
37
transcription factor
36
broad histone mark
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
89
May, 2021
49
August, 2017
38
December, 2017
31
February, 2018
29
August, 2021
26
February, 2021
9
February, 2023
8
October, 2019
6
March, 2020
5
November, 2019
Available data
264
bam
249
bigWig
127
bed narrowPeak
127
tsv
118
fastq
23
bed bed3+
17
bigBed narrowPeak
17
tagAlign
6
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
290
Homo sapiens
Biosample type
1755
tissue
628
primary cell
530
cell line
290
in vitro differentiated cells
3
stem cell
Organ
69
connective tissue
21
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
290
AMP
Genome assembly (visualization)
290
hg19
265
GRCh38
4
hg18
Lab
285
AMP-T2D consortium
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
107
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
290 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
48
7
1
neural progenitor cell
7
12
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
13
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