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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
388
ChIP-seq
10
ATAC-seq
2
DNase-seq
Assay category
388
DNA binding
12
DNA accessibility
Target of assay
348
transcription factor
85
recombinant protein
62
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
narrow histone mark
17
broad histone mark
2
other context
2
other post-translational modification
Date released
247
November, 2017
54
November, 2018
27
December, 2018
15
January, 2019
15
October, 2019
14
August, 2021
14
February, 2021
12
November, 2019
1
March, 2020
1
May, 2021
Available data
517
bigWig
509
bam
400
bed narrowPeak
367
fastq
351
bigBed narrowPeak
105
tsv
59
bed broadPeak
59
bigBed broadPeak
17
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
400
Homo sapiens
Biosample type
777
tissue
400
cell line
242
primary cell
131
in vitro differentiated cells
2
stem cell
Organ
304
liver
54
blood
54
bodily fluid
21
pancreas
15
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
Project
398
AMP
2
T1D
Genome assembly (visualization)
400
hg19
358
GRCh38
Lab
386
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
21
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
month_released!
September, 2018
BIOSAMPLE
ASSAY
400 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
303
1
GM12878
54
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
glomerular visceral epithelial cell
1
iPSC derived cell line
1
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