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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
387
total RNA-seq
19
ChIP-seq
6
ATAC-seq
2
DNase-seq
Assay category
387
Transcription
19
DNA binding
8
DNA accessibility
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
15
August, 2017
July, 2019
5
October, 2018
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
411
bigWig
409
bam
386
tsv
21
fastq
13
bed narrowPeak
10
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
2
bigBed broadPeak
1
tagAlign
Organism
414
Homo sapiens
Biosample type
414
tissue
Organ
652
pancreas
616
liver
571
connective tissue
414
adipose tissue
298
epithelium
171
heart
155
vasculature
150
blood vessel
147
brain
118
kidney
96
limb
90
artery
70
bone element
68
musculature of body
55
blood
55
bodily fluid
33
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
1
pituitary gland
Project
414
AMP
Genome assembly (visualization)
414
hg19
412
GRCh38
Lab
414
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
July, 2019
BIOSAMPLE
ASSAY
414 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
tissue
adipose tissue
382
1
3
white adipose tissue
12
omental fat pad
3
1
2
subcutaneous adipose tissue
2
2
1
visceral abdominal adipose tissue
3
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