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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
53
total RNA-seq
9
ATAC-seq
8
DNase-seq
3
Hi-C
1
FAIRE-seq
Assay category
76
DNA binding
53
Transcription
18
DNA accessibility
3
3D chromatin structure
Target of assay
67
histone
67
histone modification
43
broad histone mark
24
narrow histone mark
8
transcription factor
4
RNA binding protein
1
control
Date released
64
February, 2021
39
May, 2019
37
October, 2019
July, 2019
4
June, 2019
3
March, 2020
3
November, 2017
Available data
147
bam
139
bigWig
91
bed narrowPeak
78
bigBed narrowPeak
53
tsv
12
bed broadPeak
12
bigBed broadPeak
8
bed bed3+
4
tagAlign
3
fastq
3
hic
2
bedpe bed3+
1
tar
Organism
150
Homo sapiens
Biosample type
65
tissue
64
cell line
21
primary cell
Organ
652
pancreas
616
liver
571
connective tissue
414
adipose tissue
298
epithelium
171
heart
155
vasculature
150
blood vessel
147
brain
118
kidney
96
limb
90
artery
70
bone element
68
musculature of body
55
blood
55
bodily fluid
33
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
1
pituitary gland
Project
150
AMP
Genome assembly (visualization)
179
GRCh38
150
hg19
Lab
150
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
July, 2019
BIOSAMPLE
ASSAY
150 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
tissue
tibial artery
18
1
2
ascending aorta
13
1
aorta
11
1
1
thoracic aorta
12
coronary artery
3
2
cell line
smooth muscle cell of the coronary artery
4
52
8
primary cell
endothelial cell of umbilical vein
12
2
2
1
brain microvascular endothelial cell
3
1
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