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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
ChIP-seq
104
total RNA-seq
13
ATAC-seq
3
Hi-C
1
DNase-seq
1
pCHi-C
Assay category
141
DNA binding
104
Transcription
14
DNA accessibility
3
3D chromatin structure
Target of assay
117
transcription factor
31
RNA binding protein
22
histone
22
histone modification
20
recombinant protein
15
chromatin remodeller
12
narrow histone mark
10
broad histone mark
Date released
November, 2017
93
February, 2021
54
November, 2018
27
December, 2018
23
August, 2021
20
January, 2019
19
October, 2019
14
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
251
bigWig
243
bam
153
bed narrowPeak
105
tsv
104
bigBed narrowPeak
101
fastq
5
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
bed bed3
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
263
Homo sapiens
Biosample type
1559
tissue
583
primary cell
296
in vitro differentiated cells
263
cell line
3
stem cell
Organ
64
artery
64
blood vessel
64
heart
64
liver
64
vasculature
57
pancreas
55
blood
55
bodily fluid
52
epithelium
12
kidney
8
embryo
Project
259
AMP
4
T1D
Genome assembly (visualization)
263
hg19
246
GRCh38
Lab
248
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
60
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
1
inconsistent assembly
month_released!
November, 2017
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
263 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
pCHi-C
cell line
HepG2
56
5
1
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
1
EndoC_BH1
13
33
3
1
H1-hESC
8
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