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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
902
total RNA-seq
494
ChIP-seq
121
ATAC-seq
16
small RNA-seq
11
Hi-C
9
RRBS
4
FAIRE-seq
1
DNase-seq
1
snATAC-seq
Assay category
918
Transcription
494
DNA binding
127
DNA accessibility
11
3D chromatin structure
9
DNA methylation
Target of assay
403
histone modification
402
histone
224
narrow histone mark
178
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
170
May, 2020
159
October, 2019
154
August, 2017
116
July, 2018
93
May, 2019
65
April, 2019
60
July, 2019
45
October, 2018
40
November, 2019
39
May, 2022
38
May, 2021
36
December, 2017
33
February, 2023
18
March, 2020
9
October, 2017
8
November, 2018
6
April, 2018
6
January, 2019
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1643
bam
1641
bigWig
918
tsv
771
bed narrowPeak
488
bigBed narrowPeak
294
fastq
bed broadPeak
189
bed bed3+
160
bigBed broadPeak
99
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1559
Homo sapiens
Biosample type
1559
tissue
583
primary cell
296
in vitro differentiated cells
263
cell line
3
stem cell
Organ
479
connective tissue
421
adipose tissue
396
pancreas
265
liver
117
brain
88
heart
70
bone element
65
blood vessel
65
vasculature
60
limb
29
nerve
27
eye
25
kidney
23
artery
16
musculature of body
13
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
1557
AMP
2
T1D
Genome assembly (visualization)
1616
GRCh38
1559
hg19
Lab
1517
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
3
inconsistent ontology term
1
audit script error
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
November, 2017
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
1559 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
DNase-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
266
25
41
2
1
1
1
liver
147
83
20
1
1
1
bone tissue
58
heart left ventricle
3
29
2
1
1
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