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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
902
total RNA-seq
516
ChIP-seq
152
DNase-seq
122
ATAC-seq
16
small RNA-seq
11
Hi-C
9
RRBS
3
FAIRE-seq
1
snATAC-seq
Assay category
918
Transcription
516
DNA binding
278
DNA accessibility
11
3D chromatin structure
9
DNA methylation
Target of assay
432
histone modification
431
histone
235
narrow histone mark
196
broad histone mark
81
transcription factor
22
RNA binding protein
3
control
2
chromatin remodeller
Date released
452
February, 2021
180
August, 2017
170
May, 2020
163
October, 2019
147
June, 2019
116
July, 2018
93
May, 2019
65
April, 2019
60
July, 2019
45
October, 2018
40
November, 2019
39
May, 2022
38
May, 2021
36
December, 2017
33
February, 2023
18
March, 2020
November, 2018
13
October, 2017
6
April, 2018
6
January, 2019
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1626
bam
1624
bigWig
918
tsv
754
bed narrowPeak
471
bigBed narrowPeak
277
fastq
181
bed broadPeak
180
bed bed3+
151
bigBed broadPeak
99
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1726
Homo sapiens
Biosample type
1732
tissue
619
primary cell
297
in vitro differentiated cells
210
cell line
3
stem cell
Organ
481
connective tissue
423
adipose tissue
410
pancreas
261
liver
135
brain
113
heart
96
limb
92
kidney
70
blood vessel
70
bone element
70
vasculature
61
musculature of body
31
nerve
30
eye
27
artery
18
ureter
12
epithelium
12
skeleton
10
spleen
1
pericardium
1
pituitary gland
Project
1730
AMP
2
T1D
Genome assembly (visualization)
1780
GRCh38
1732
hg19
Lab
1689
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2017
November, 2018
BIOSAMPLE
ASSAY
1732 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
266
31
1
42
2
1
1
liver
147
79
20
1
1
1
bone tissue
58
heart left ventricle
3
29
3
2
1
1
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