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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
877
total RNA-seq
529
ChIP-seq
143
DNase-seq
102
ATAC-seq
16
small RNA-seq
10
Hi-C
9
RRBS
6
single cell RNA-seq
4
FAIRE-seq
1
snATAC-seq
Assay category
899
Transcription
529
DNA binding
250
DNA accessibility
10
3D chromatin structure
9
DNA methylation
Target of assay
438
histone modification
437
histone
239
narrow histone mark
198
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
180
August, 2017
170
May, 2020
163
October, 2019
129
June, 2019
116
July, 2018
93
May, 2019
65
April, 2019
60
July, 2019
45
October, 2018
November, 2019
39
May, 2022
38
May, 2021
36
December, 2017
33
February, 2023
18
March, 2020
17
November, 2018
13
October, 2017
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1610
bigWig
1591
bam
899
tsv
739
bed narrowPeak
475
bigBed narrowPeak
294
fastq
178
bed broadPeak
171
bed bed3+
142
bigBed broadPeak
105
tagAlign
10
hic
9
bed bedMethyl
9
bigBed bedMethyl
8
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1691
Homo sapiens
Biosample type
1697
tissue
628
primary cell
516
cell line
292
in vitro differentiated cells
3
stem cell
Organ
481
connective tissue
423
adipose tissue
374
pancreas
268
liver
143
brain
113
heart
96
limb
92
kidney
70
blood vessel
70
bone element
70
vasculature
61
musculature of body
31
nerve
30
eye
27
artery
ureter
14
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
1695
AMP
2
T1D
Genome assembly (visualization)
1802
GRCh38
1697
hg19
Lab
1654
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2019
organ_slims!
ureter
BIOSAMPLE
ASSAY
1697 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
241
31
1
23
1
1
6
1
liver
147
83
2
20
1
1
1
bone tissue
58
heart left ventricle
3
29
3
2
1
1
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