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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ChIP-seq
28
ATAC-seq
26
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
1
FAIRE-seq
Assay category
125
DNA binding
55
DNA accessibility
12
Transcription
3
3D chromatin structure
3
DNA methylation
Target of assay
118
histone
118
histone modification
93
narrow histone mark
25
broad histone mark
6
control
4
RNA binding protein
4
transcription factor
Date released
78
October, 2019
28
February, 2023
26
June, 2019
25
May, 2019
18
July, 2019
15
November, 2017
6
October, 2017
2
November, 2018
Available data
174
bed narrowPeak
165
bigWig
161
bam
71
bigBed narrowPeak
43
tagAlign
41
bed broadPeak
32
bigBed broadPeak
29
bed bed3+
17
fastq
12
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
198
Homo sapiens
Biosample type
173
tissue
25
primary cell
Organ
655
pancreas
625
liver
589
connective tissue
426
adipose tissue
308
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
198
AMP
Genome assembly (visualization)
223
GRCh38
198
hg19
Lab
198
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
October, 2022
BIOSAMPLE
ASSAY
198 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
tissue
brain
11
1
14
1
1
retina
15
3
temporal lobe
13
1
1
angular gyrus
14
pigmented layer of retina
12
+ See 68 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
retinal pigment epithelial cell
2
1
1
brain pericyte
1
1
+ See 3 more…
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