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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
13
total RNA-seq
10
Hi-C
4
ATAC-seq
2
pCHi-C
Assay category
33
DNA binding
13
Transcription
10
3D chromatin structure
4
DNA accessibility
Target of assay
28
transcription factor
3
histone
3
histone modification
3
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
50
bigWig
46
bam
33
bed narrowPeak
30
bigBed narrowPeak
30
fastq
15
tsv
12
bedpe bed3+
10
hic
2
ibed
Organism
62
Homo sapiens
Biosample type
34
cell line
21
tissue
6
in vitro differentiated cells
1
primary cell
Organ
27
blood
27
bodily fluid
11
pancreas
6
epithelium
4
heart
4
musculature of body
3
blood vessel
3
spleen
3
vasculature
2
liver
1
vein
Project
57
AMP
5
T1D
Genome assembly (visualization)
62
hg19
46
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
62 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
pCHi-C
cell line
GM12878
27
EndoC_BH1
1
2
2
early embryonic cell
2
tissue
islet of Langerhans
2
2
psoas muscle
2
2
spleen
3
aorta
1
1
heart left ventricle
1
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
1
1
lymphocyte of B lineage (iPSC)
1
1
1
primary cell
endothelial cell of umbilical vein
1
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