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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
Hi-C
13
total RNA-seq
4
ATAC-seq
3
ChIP-seq
2
pCHi-C
Assay category
13
3D chromatin structure
13
Transcription
4
DNA accessibility
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
20
bigWig
16
bam
15
bedpe bed3+
15
tsv
13
hic
3
bed narrowPeak
3
cool
2
ibed
Organism
35
Homo sapiens
Biosample type
18
tissue
7
cell line
6
in vitro differentiated cells
4
primary cell
Organ
14
pancreas
9
epithelium
4
heart
4
musculature of body
3
blood vessel
3
vasculature
2
liver
1
vein
Project
27
AMP
5
T1D
3
HPAP
Genome assembly (visualization)
35
hg19
16
GRCh38
Lab
32
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
11
inconsistent ontology term
3
audit script error
BIOSAMPLE
ASSAY
35 results
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Clear Filters
Hi-C
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
islet of Langerhans
2
2
psoas muscle
2
2
aorta
1
1
heart left ventricle
1
1
heart right ventricle
1
1
+ See 2 more…
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
1
1
lymphocyte of B lineage (iPSC)
1
1
1
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
See all biosamples
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