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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
15
RRBS
12
ATAC-seq
6
ChIP-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
15
DNA methylation
14
DNA accessibility
6
DNA binding
4
3D chromatin structure
Target of assay
6
histone
6
histone modification
5
broad histone mark
3
control
1
narrow histone mark
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
89
bigWig
84
bam
65
tsv
19
bed narrowPeak
15
bed bedMethyl
15
bigBed bedMethyl
13
fastq
8
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
hdf5
Organism
104
Homo sapiens
Biosample type
73
tissue
31
primary cell
Organ
23
brain
19
connective tissue
17
heart
13
adipose tissue
13
epithelium
11
kidney
11
pancreas
10
vasculature
9
blood vessel
9
liver
5
musculature of body
3
artery
2
pericardium
1
eye
1
spleen
Project
104
AMP
Genome assembly (visualization)
104
hg19
93
GRCh38
Lab
103
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
104 results
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total RNA-seq
small RNA-seq
RRBS
ATAC-seq
ChIP-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
body of pancreas
2
2
4
brain
1
6
omental fat pad
4
1
1
heart left ventricle
2
1
2
subcutaneous adipose tissue
4
1
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primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
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