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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
DNase-seq
110
ChIP-seq
1
ATAC-seq
Assay category
176
DNA accessibility
110
DNA binding
Target of assay
62
histone
62
histone modification
48
transcription factor
34
broad histone mark
28
narrow histone mark
8
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
160
June, 2019
68
November, 2017
41
August, 2017
9
November, 2018
4
October, 2017
3
October, 2019
1
November, 2020
Available data
2868
bigWig
2844
bam
1505
bed narrowPeak
1344
tsv
1005
fastq
885
bigBed narrowPeak
286
bed broadPeak
250
bigBed broadPeak
240
bed bed3+
234
tagAlign
19
bed bedMethyl
19
bedpe bed3+
19
bigBed bedMethyl
19
hic
12
bed bed3
7
bed bedgraph
4
txt
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
280
Homo sapiens
Biosample type
191
tissue
59
cell line
35
primary cell
1
in vitro differentiated cells
Organ
71
kidney
63
liver
46
musculature of body
37
brain
36
limb
27
heart
18
pancreas
18
ureter
16
epithelium
16
vasculature
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
286
AMP
Genome assembly (visualization)
286
hg19
271
GRCh38
Lab
285
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
286 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
brain
14
3
muscle of arm
17
heart
16
kidney
13
muscle of leg
13
+ See 32 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
choroid plexus epithelial cell
1
2
cardiac fibroblast
2
astrocyte of the hippocampus
1
+ See 12 more…
in vitro differentiated cells
adipocyte
1
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