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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
324
total RNA-seq
80
single cell RNA-seq
2
ATAC-seq
2
small RNA-seq
Assay category
406
Transcription
2
DNA accessibility
Date released
153
July, 2018
89
August, 2017
40
May, 2021
39
April, 2018
26
February, 2021
26
September, 2018
20
November, 2019
5
March, 2020
4
July, 2019
3
August, 2018
2
October, 2018
1
June, 2018
Available data
635
bam
607
bigWig
408
tsv
363
fastq
212
bed narrowPeak
89
bigBed narrowPeak
27
bed bed3+
18
bed broadPeak
14
tagAlign
7
hic
6
bedpe bed3+
5
bigBed broadPeak
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe
1
hdf5
Organism
408
Homo sapiens
Biosample type
272
tissue
102
primary cell
34
cell line
Organ
474
connective tissue
408
pancreas
398
adipose tissue
162
liver
147
epithelium
70
heart
58
blood vessel
bone element
58
vasculature
54
artery
14
embryo
12
brain
12
kidney
6
musculature of body
4
limb
4
nerve
1
pericardium
Project
406
AMP
2
T1D
Genome assembly (visualization)
408
hg19
406
GRCh38
Lab
408
AMP-T2D consortium
Audit category:
39
inconsistent ontology term
organ_slims!
bone element
BIOSAMPLE
ASSAY
408 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
tissue
islet of Langerhans
260
6
1
body of pancreas
2
2
pancreas
1
primary cell
pancreatic alpha cell
10
12
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
33
1
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